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AnVILWorkflow

Run workflows implemented in Terra/AnVIL workspace


Bioconductor version: Release (3.18)

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

Author: Sehyun Oh [aut, cre]

Maintainer: Sehyun Oh <shbrief at gmail.com>

Citation (from within R, enter citation("AnVILWorkflow")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILWorkflow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILWorkflow")
Quickstart: RNAseq analysis using salmon HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.2.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.2.0)
Imports utils, AnVIL, httr, methods, jsonlite
System Requirements
URL
Bug Reports https://github.com/shbrief/AnVILWorkflow/issues
See More
Suggests knitr, tibble, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILWorkflow_1.2.0.tar.gz
Windows Binary AnVILWorkflow_1.2.0.zip
macOS Binary (x86_64) AnVILWorkflow_1.2.0.tgz
macOS Binary (arm64) AnVILWorkflow_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVILWorkflow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILWorkflow
Bioc Package Browser https://code.bioconductor.org/browse/AnVILWorkflow/
Package Short Url https://bioconductor.org/packages/AnVILWorkflow/
Package Downloads Report Download Stats