Anaquin
This is the released version of Anaquin; for the devel version, see Anaquin.
Statistical analysis of sequins
Bioconductor version: Release (3.20)
The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.
Author: Ted Wong
Maintainer: Ted Wong <t.wong at garvan.org.au>
citation("Anaquin")
):
Hardwick S, Chen W, Wong T, Mercer T (2016). “Spliced synthetic genes as internal controls in RNA sequencing experiments.” Nature Methods. In press.
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Anaquin")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Anaquin")
Anaquin - Vignette | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software |
Version | 2.30.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | BSD_3_clause + file LICENSE |
Depends | R (>= 3.3), ggplot2 (>= 2.2.0) |
Imports | ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2 |
System Requirements | |
URL | www.sequin.xyz |
Bug Reports | https://github.com/student-t/RAnaquin/issues |
See More
Suggests | RUnit, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Anaquin_2.30.0.tar.gz |
Windows Binary (x86_64) | Anaquin_2.30.0.zip |
macOS Binary (x86_64) | Anaquin_2.30.0.tgz |
macOS Binary (arm64) | Anaquin_2.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Anaquin |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Anaquin |
Bioc Package Browser | https://code.bioconductor.org/browse/Anaquin/ |
Package Short Url | https://bioconductor.org/packages/Anaquin/ |
Package Downloads Report | Download Stats |