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BioTIP

BioTIP: An R package for characterization of Biological Tipping-Point


Bioconductor version: Release (3.18)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")
BioTIP- an R package for characterization of Biological Tipping-Point HTML R Script
Reference Manual PDF

Details

biocViews GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.16.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-2
Depends R (>= 3.6)
Imports igraph, cluster, psych, stringr, GenomicRanges, MASS, scran
System Requirements
URL https://github.com/xyang2uchicago/BioTIP
See More
Suggests knitr, markdown, base, rmarkdown, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioTIP_1.16.0.tar.gz
Windows Binary BioTIP_1.16.0.zip (64-bit only)
macOS Binary (x86_64) BioTIP_1.16.0.tgz
macOS Binary (arm64) BioTIP_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser https://code.bioconductor.org/browse/BioTIP/
Package Short Url https://bioconductor.org/packages/BioTIP/
Package Downloads Report Download Stats