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Calling aberrations for array CGH tumor profiles.

Bioconductor version: Release (3.18)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHcall")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

CGHcall PDF R Script
Reference Manual PDF


biocViews Microarray, Preprocessing, Software, Visualization
Version 2.64.0
In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)
License GPL (http://www.gnu.org/copyleft/gpl.html)
Depends R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
System Requirements
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Linking To
Depends On Me CGHnormaliter, GeneBreak
Imports Me CGHnormaliter, QDNAseq
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package CGHcall_2.64.0.tar.gz
Windows Binary CGHcall_2.64.0.zip
macOS Binary (x86_64) CGHcall_2.64.0.tgz
macOS Binary (arm64) CGHcall_2.64.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGHcall
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGHcall
Bioc Package Browser https://code.bioconductor.org/browse/CGHcall/
Package Short Url https://bioconductor.org/packages/CGHcall/
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