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CRImage

CRImage a package to classify cells and calculate tumour cellularity


Bioconductor version: Release (3.18)

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Author: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>

Citation (from within R, enter citation("CRImage")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CRImage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CRImage")
CRImage Manual PDF R Script
Reference Manual PDF

Details

biocViews CellBiology, Classification, Software
Version 1.50.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License Artistic-2.0
Depends EBImage, DNAcopy, aCGH
Imports MASS, e1071, foreach, sgeostat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CRImage_1.50.0.tar.gz
Windows Binary CRImage_1.50.0.zip
macOS Binary (x86_64) CRImage_1.50.0.tgz
macOS Binary (arm64) CRImage_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CRImage
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CRImage
Bioc Package Browser https://code.bioconductor.org/browse/CRImage/
Package Short Url https://bioconductor.org/packages/CRImage/
Package Downloads Report Download Stats