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Read and write mass spectrometry imaging files

Bioconductor version: Release (3.18)

Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.

Author: Kylie Ariel Bemis [aut, cre]

Maintainer: Kylie Ariel Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("CardinalIO")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Parsing and writing imzML files HTML R Script
Reference Manual PDF


biocViews DataImport, ImagingMassSpectrometry, Infrastructure, MassSpectrometry, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3), matter, ontologyIndex
Imports methods, S4Vectors, stats, utils, tools
System Requirements
URL http://www.cardinalmsi.org
Bug Reports https://github.com/kuwisdelu/CardinalIO/issues
See More
Suggests BiocStyle, testthat, knitr, rmarkdown
Linking To
Depends On Me
Imports Me Cardinal
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CardinalIO_1.0.0.tar.gz
Windows Binary CardinalIO_1.0.0.zip
macOS Binary (x86_64) CardinalIO_1.0.0.tgz
macOS Binary (arm64) CardinalIO_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CardinalIO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CardinalIO
Bioc Package Browser https://code.bioconductor.org/browse/CardinalIO/
Package Short Url https://bioconductor.org/packages/CardinalIO/
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