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CardinalIO

Read and write mass spectrometry imaging files


Bioconductor version: Release (3.18)

Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.

Author: Kylie Ariel Bemis [aut, cre]

Maintainer: Kylie Ariel Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("CardinalIO")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CardinalIO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalIO")
Parsing and writing imzML files HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ImagingMassSpectrometry, Infrastructure, MassSpectrometry, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3), matter, ontologyIndex
Imports methods, S4Vectors, stats, utils, tools
System Requirements
URL http://www.cardinalmsi.org
Bug Reports https://github.com/kuwisdelu/CardinalIO/issues
See More
Suggests BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me Cardinal
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CardinalIO_1.0.0.tar.gz
Windows Binary CardinalIO_1.0.0.zip
macOS Binary (x86_64) CardinalIO_1.0.0.tgz
macOS Binary (arm64) CardinalIO_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CardinalIO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CardinalIO
Bioc Package Browser https://code.bioconductor.org/browse/CardinalIO/
Package Short Url https://bioconductor.org/packages/CardinalIO/
Package Downloads Report Download Stats