CellMixS

DOI: 10.18129/B9.bioc.CellMixS    

Evaluate Cellspecific Mixing

Bioconductor version: Release (3.10)

Evaluate Cellspecific Mixing Scores (CMS) for different batches/groups in scRNA-seq data.

Author: Almut Lütge

Maintainer: Almut Lütge <almut.luetge at uzh.ch>

Citation (from within R, enter citation("CellMixS")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CellMixS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellMixS")

 

HTML R Script Explore data integration and batch effects
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, GeneExpression, SingleCell, Software, Transcriptomics
Version 1.2.1
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License GPL (>=2)
Depends kSamples, R (>= 3.6)
Imports BiocNeighbors, ggplot2, scater, viridis, cowplot, SummarizedExperiment, SingleCellExperiment, tidyr, magrittr, dplyr, ggridges, stats, purrr, listarrays, methods, BiocParallel, BiocGenerics
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, limma
SystemRequirements
Enhances
URL https://github.com/almutlue/CellMixS
BugReports https://github.com/almutlue/CellMixS/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CellMixS_1.2.1.tar.gz
Windows Binary CellMixS_1.2.1.zip
Mac OS X 10.11 (El Capitan) CellMixS_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/CellMixS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CellMixS
Package Short Url https://bioconductor.org/packages/CellMixS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive

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