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ComPrAn

Complexome Profiling Analysis package


Bioconductor version: Release (3.18)

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Author: Rick Scavetta [aut], Petra Palenikova [aut, cre]

Maintainer: Petra Palenikova <palenikova3 at gmail.com>

Citation (from within R, enter citation("ComPrAn")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComPrAn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComPrAn")
fileFormats.html HTML R Script
Protein workflow HTML R Script
SILAC complexomics HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews MassSpectrometry, Proteomics, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License MIT + file LICENSE
Depends
Imports data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr, rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio, scales, shinydashboard, shinyjs, stats, tibble, grid
System Requirements
URL
See More
Suggests testthat (>= 2.1.0), knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComPrAn_1.10.0.tar.gz
Windows Binary ComPrAn_1.10.0.zip (64-bit only)
macOS Binary (x86_64) ComPrAn_1.10.0.tgz
macOS Binary (arm64) ComPrAn_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComPrAn
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComPrAn
Bioc Package Browser https://code.bioconductor.org/browse/ComPrAn/
Package Short Url https://bioconductor.org/packages/ComPrAn/
Package Downloads Report Download Stats