Welcome to the new bioconductor.org!


Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Bioconductor version: Release (3.18)

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>

Maintainer: Ting Gong <tinggong at gmail.com>

Citation (from within R, enter citation("DeconRNASeq")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

DeconRNASeq Demo PDF R Script
Reference Manual PDF


biocViews DifferentialExpression, Software
Version 1.44.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL-2
Depends R (>= 2.14.0), limSolve, pcaMethods, ggplot2, grid
System Requirements
See More
Linking To
Depends On Me
Imports Me
Suggests Me ADAPTS
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeconRNASeq_1.44.0.tar.gz
Windows Binary DeconRNASeq_1.44.0.zip
macOS Binary (x86_64) DeconRNASeq_1.44.0.tgz
macOS Binary (arm64) DeconRNASeq_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DeconRNASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DeconRNASeq
Bioc Package Browser https://code.bioconductor.org/browse/DeconRNASeq/
Package Short Url https://bioconductor.org/packages/DeconRNASeq/
Package Downloads Report Download Stats