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DeepBlueR

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DeepBlueR.

DeepBlueR


Bioconductor version: Release (3.18)

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>, Markus List <markus.list at tum.de>, Quirin Manz <quirin.manz at tum.de>

Citation (from within R, enter citation("DeepBlueR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DeepBlueR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeepBlueR")
The DeepBlue epigenomic data server - R package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, ImmunoOncology, Preprocessing, Software, ThirdPartyClient
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>=2.0)
Depends R (>= 3.3), XML, RCurl
Imports GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
System Requirements
URL
See More
Suggests knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeepBlueR_1.27.0.tar.gz
Windows Binary DeepBlueR_1.27.0.zip (64-bit only)
macOS Binary (x86_64) DeepBlueR_1.27.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DeepBlueR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DeepBlueR
Bioc Package Browser https://code.bioconductor.org/browse/DeepBlueR/
Package Short Url https://bioconductor.org/packages/DeepBlueR/
Package Downloads Report Download Stats