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EBSEA

Exon Based Strategy for Expression Analysis of genes


Bioconductor version: Release (3.18)

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Citation (from within R, enter citation("EBSEA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")
EBSEA HTML R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, Sequencing, Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends R (>= 4.0.0)
Imports DESeq2, graphics, stats, EmpiricalBrownsMethod
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBSEA_1.30.0.tar.gz
Windows Binary EBSEA_1.30.0.zip
macOS Binary (x86_64) EBSEA_1.30.0.tgz
macOS Binary (arm64) EBSEA_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSEA
Bioc Package Browser https://code.bioconductor.org/browse/EBSEA/
Package Short Url https://bioconductor.org/packages/EBSEA/
Package Downloads Report Download Stats