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GMRP

GWAS-based Mendelian Randomization and Path Analyses


Bioconductor version: Release (3.18)

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Author: Yuan-De Tan

Maintainer: Yuan-De Tan <tanyuande at gmail.com>

Citation (from within R, enter citation("GMRP")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GMRP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GMRP")
Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package PDF R Script
GMRP-manual.pdf PDF
Reference Manual PDF

Details

biocViews Regression, SNP, Sequencing, Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>= 2)
Depends R (>= 3.3.0), stats, utils, graphics, grDevices, diagram, plotrix, base, GenomicRanges
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GMRP_1.30.0.tar.gz
Windows Binary GMRP_1.30.0.zip
macOS Binary (x86_64) GMRP_1.30.0.tgz
macOS Binary (arm64) GMRP_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GMRP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GMRP
Bioc Package Browser https://code.bioconductor.org/browse/GMRP/
Package Short Url https://bioconductor.org/packages/GMRP/
Package Downloads Report Download Stats