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GraphAlignment

GraphAlignment


Bioconductor version: Release (3.18)

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

Citation (from within R, enter citation("GraphAlignment")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GraphAlignment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GraphAlignment")
GraphAlignment PDF R Script
Reference Manual PDF
LICENSE Text

Details

biocViews GraphAndNetwork, Network, Software
Version 1.66.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License file LICENSE
Depends
Imports
System Requirements
URL http://www.thp.uni-koeln.de/~berg/GraphAlignment/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GraphAlignment_1.66.0.tar.gz
Windows Binary GraphAlignment_1.66.0.zip (64-bit only)
macOS Binary (x86_64) GraphAlignment_1.66.0.tgz
macOS Binary (arm64) GraphAlignment_1.66.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GraphAlignment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GraphAlignment
Bioc Package Browser https://code.bioconductor.org/browse/GraphAlignment/
Package Short Url https://bioconductor.org/packages/GraphAlignment/
Package Downloads Report Download Stats