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MOGAMUN

MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks


Bioconductor version: Release (3.18)

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Author: Elva-María Novoa-del-Toro [aut, cre]

Maintainer: Elva-María Novoa-del-Toro <elvanov at hotmail.com>

Citation (from within R, enter citation("MOGAMUN")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOGAMUN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOGAMUN")
Finding active modules with MOGAMUN HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3 + file LICENSE
Depends
Imports stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph
System Requirements
URL https://github.com/elvanov/MOGAMUN
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MOGAMUN_1.12.0.tar.gz
Windows Binary MOGAMUN_1.12.0.zip
macOS Binary (x86_64) MOGAMUN_1.12.0.tgz
macOS Binary (arm64) MOGAMUN_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MOGAMUN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MOGAMUN
Bioc Package Browser https://code.bioconductor.org/browse/MOGAMUN/
Package Short Url https://bioconductor.org/packages/MOGAMUN/
Package Downloads Report Download Stats