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MetaVolcanoR

Gene Expression Meta-analysis Visualization Tool


Bioconductor version: Release (3.18)

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada.medina at gmail.com>

Citation (from within R, enter citation("MetaVolcanoR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaVolcanoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.16.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 4.1.1)
Imports methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary MetaVolcanoR_1.16.0.zip
macOS Binary (x86_64) MetaVolcanoR_1.16.0.tgz
macOS Binary (arm64) MetaVolcanoR_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaVolcanoR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaVolcanoR
Bioc Package Browser https://code.bioconductor.org/browse/MetaVolcanoR/
Package Short Url https://bioconductor.org/packages/MetaVolcanoR/
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