MethylSeekR

DOI: 10.18129/B9.bioc.MethylSeekR    

Segmentation of Bis-seq data

Bioconductor version: Release (3.10)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Citation (from within R, enter citation("MethylSeekR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethylSeekR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")

 

PDF R Script MethylSeekR
PDF   Reference Manual

Details

biocViews DNAMethylation, MethylSeq, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.12 (R-3.0) (6.5 years)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
LinkingTo
Suggests BSgenome.Hsapiens.UCSC.hg18
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me methylPipe, RnBeads
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethylSeekR_1.26.0.tar.gz
Windows Binary MethylSeekR_1.26.0.zip
Mac OS X 10.11 (El Capitan) MethylSeekR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MethylSeekR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethylSeekR
Package Short Url https://bioconductor.org/packages/MethylSeekR/
Package Downloads Report Download Stats

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