NCIgraph
Pathways from the NCI Pathways Database
Bioconductor version: Release (3.19)
Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.
Author: Laurent Jacob
Maintainer: Laurent Jacob <laurent.jacob at gmail.com>
Citation (from within R, enter
citation("NCIgraph")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NCIgraph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NCIgraph")
NCIgraph: networks from the NCI pathway integrated database as graphNEL objects. | R Script | |
Reference Manual |
Details
biocViews | GraphAndNetwork, Pathways, Software |
Version | 1.52.0 |
In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
License | GPL-3 |
Depends | R (>= 4.0.0) |
Imports | graph, KEGGgraph, methods, RBGL, RCy3, R.oo |
System Requirements | |
URL |
See More
Suggests | Rgraphviz |
Linking To | |
Enhances | DEGraph |
Depends On Me | |
Imports Me | DEGraph |
Suggests Me | DEGraph |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | NCIgraph_1.52.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/NCIgraph |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NCIgraph |
Bioc Package Browser | https://code.bioconductor.org/browse/NCIgraph/ |
Package Short Url | https://bioconductor.org/packages/NCIgraph/ |
Package Downloads Report | Download Stats |