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NTW

Predict gene network using an Ordinary Differential Equation (ODE) based method


Bioconductor version: Release (3.18)

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>

Citation (from within R, enter citation("NTW")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NTW")
NTW vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Preprocessing, Software
Version 1.52.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL-2
Depends R (>= 2.3.0)
Imports mvtnorm, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NTW_1.52.0.tar.gz
Windows Binary NTW_1.52.0.zip
macOS Binary (x86_64) NTW_1.52.0.tgz
macOS Binary (arm64) NTW_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NTW
Bioc Package Browser https://code.bioconductor.org/browse/NTW/
Package Short Url https://bioconductor.org/packages/NTW/
Package Downloads Report Download Stats