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Path2PPI

Prediction of pathway-related protein-protein interaction networks


Bioconductor version: Release (3.18)

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Author: Oliver Philipp [aut, cre], Ina Koch [ctb]

Maintainer: Oliver Philipp <contact at oliverphilipp.info>

Citation (from within R, enter citation("Path2PPI")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Path2PPI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Path2PPI")
Path2PPI - A brief tutorial HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.2.1), igraph (>= 1.0.1), methods
Imports
System Requirements
URL http://www.bioinformatik.uni-frankfurt.de/
See More
Suggests knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Path2PPI_1.32.0.tar.gz
Windows Binary Path2PPI_1.32.0.zip
macOS Binary (x86_64) Path2PPI_1.32.0.tgz
macOS Binary (arm64) Path2PPI_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Path2PPI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Path2PPI
Bioc Package Browser https://code.bioconductor.org/browse/Path2PPI/
Package Short Url https://bioconductor.org/packages/Path2PPI/
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