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RImmPort

RImmPort: Enabling Ready-for-analysis Immunology Research Data


Bioconductor version: Release (3.18)

The RImmPort package simplifies access to ImmPort data for analysis in the R environment. It provides a standards-based interface to the ImmPort study data that is in a proprietary format.

Author: Ravi Shankar <rshankar at stanford.edu>

Maintainer: Zicheng Hu <Zicheng.Hu at ucsf.edu>, Ravi Shankar <rshankar at stanford.edu>

Citation (from within R, enter citation("RImmPort")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RImmPort")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RImmPort")
RImmPort: Enabling ready-for-analysis immunology research data PDF R Script
RImmPort: Quick Start Guide PDF R Script
Reference Manual PDF

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends
Imports plyr, dplyr, DBI, data.table, reshape2, methods, sqldf, tools, utils, RSQLite
System Requirements
URL http://bioconductor.org/packages/RImmPort/
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Suggests knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RImmPort_1.30.0.tar.gz
Windows Binary RImmPort_1.30.0.zip
macOS Binary (x86_64) RImmPort_1.30.0.tgz
macOS Binary (arm64) RImmPort_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RImmPort
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RImmPort
Bioc Package Browser https://code.bioconductor.org/browse/RImmPort/
Package Short Url https://bioconductor.org/packages/RImmPort/
Package Downloads Report Download Stats