RaggedExperiment

DOI: 10.18129/B9.bioc.RaggedExperiment    

Representation of Sparse Experiments and Assays Across Samples

Bioconductor version: Release (3.9)

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.

Author: Martin Morgan [aut, cre], Marcel Ramos [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("RaggedExperiment")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RaggedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RaggedExperiment")

 

HTML R Script RaggedExperiment
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.8.0
In Bioconductor since BioC 3.5 (R-3.4) (2.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), GenomicRanges
Imports BiocGenerics, GenomeInfoDb, IRanges, methods, S4Vectors, stats, SummarizedExperiment
LinkingTo
Suggests BiocStyle, knitr, testthat, MultiAssayExperiment
SystemRequirements
Enhances
URL
BugReports https://github.com/Bioconductor/RaggedExperiment/issues
Depends On Me CNVRanger, TxRegInfra
Imports Me omicsPrint, RTCGAToolbox, TCGAutils
Suggests Me MultiAssayExperiment, MultiDataSet
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RaggedExperiment_1.8.0.tar.gz
Windows Binary RaggedExperiment_1.8.0.zip
Mac OS X 10.11 (El Capitan) RaggedExperiment_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RaggedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RaggedExperiment
Package Short Url http://bioconductor.org/packages/RaggedExperiment/
Package Downloads Report Download Stats

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