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ReactomeContentService4R

Interface for the Reactome Content Service


Bioconductor version: Release (3.18)

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

Author: Chi-Lam Poon [aut, cre] , Reactome [cph]

Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>

Citation (from within R, enter citation("ReactomeContentService4R")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReactomeContentService4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomeContentService4R")
ReactomeContentService4R HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Pathways, Reactome, Software
Version 1.10.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License Apache License (>= 2.0) | file LICENSE
Depends
Imports httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel
System Requirements
URL https://github.com/reactome/ReactomeContentService4R
Bug Reports https://github.com/reactome/ReactomeContentService4R/issues
See More
Suggests pdftools, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me ReactomeGraph4R
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ReactomeContentService4R_1.10.0.tar.gz
Windows Binary ReactomeContentService4R_1.10.0.zip
macOS Binary (x86_64) ReactomeContentService4R_1.10.0.tgz
macOS Binary (arm64) ReactomeContentService4R_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ReactomeContentService4R
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReactomeContentService4R
Bioc Package Browser https://code.bioconductor.org/browse/ReactomeContentService4R/
Package Short Url https://bioconductor.org/packages/ReactomeContentService4R/
Package Downloads Report Download Stats