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RedisParam

Provide a 'redis' back-end for BiocParallel


Bioconductor version: Release (3.18)

This package provides a Redis-based back-end for BiocParallel, enabling an alternative mechanism for distributed computation. The The 'manager' distributes tasks to a 'worker' pool through a central Redis server, rather than directly to workers as with other BiocParallel implementations. This means that the worker pool can change dynamically during job evaluation. All features of BiocParallel are supported, including reproducible random number streams, logging to the manager, and alternative 'load balancing' task distributions.

Author: Martin Morgan [aut, cre] , Jiefei Wang [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("RedisParam")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RedisParam")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedisParam")
RedisParam for Developers HTML R Script
Using RedisParam HTML R Script
Reference Manual PDF
NEWS Text
INSTALL Text

Details

biocViews Infrastructure, Software
Version 1.4.0
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License Artistic-2.0
Depends R (>= 4.2.0), BiocParallel(>= 1.29.12)
Imports methods, redux, withr, futile.logger
System Requirements hiredis
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Suggests rmarkdown, knitr, testthat, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedisParam_1.4.0.tar.gz
Windows Binary RedisParam_1.4.0.zip
macOS Binary (x86_64) RedisParam_1.4.0.tgz
macOS Binary (arm64) RedisParam_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedisParam
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedisParam
Bioc Package Browser https://code.bioconductor.org/browse/RedisParam/
Package Short Url https://bioconductor.org/packages/RedisParam/
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