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SQUADD

Add-on of the SQUAD Software


Bioconductor version: Release (3.18)

This package SQUADD is a SQUAD add-on. It permits to generate SQUAD simulation matrix, prediction Heat-Map and Correlation Circle from PCA analysis.

Author: Martial Sankar, supervised by Christian Hardtke and Ioannis Xenarios

Maintainer: Martial Sankar <martial.sankar at sib.swiss>

Citation (from within R, enter citation("SQUADD")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SQUADD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SQUADD")
SQUADD ERK exemple PDF R Script
SQUADD HOW-TO PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, Network, Software, Visualization
Version 1.52.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL (>=2)
Depends R (>= 2.11.0)
Imports graphics, grDevices, methods, RColorBrewer, stats, utils
System Requirements
URL http://www.unil.ch/dbmv/page21142_en.html
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SQUADD_1.52.0.tar.gz
Windows Binary SQUADD_1.52.0.zip
macOS Binary (x86_64) SQUADD_1.52.0.tgz
macOS Binary (arm64) SQUADD_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SQUADD
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SQUADD
Bioc Package Browser https://code.bioconductor.org/browse/SQUADD/
Package Short Url https://bioconductor.org/packages/SQUADD/
Package Downloads Report Download Stats