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SimBindProfiles

Similar Binding Profiles


Bioconductor version: Release (3.18)

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell

Maintainer: Bettina Fischer <bef22 at cam.ac.uk>

Citation (from within R, enter citation("SimBindProfiles")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SimBindProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SimBindProfiles")
SimBindProfiles: Similar Binding Profiles, identifies common and unique regions in array genome tiling array data PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Software
Version 1.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 2.10), methods, Ringo
Imports limma, mclust, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SimBindProfiles_1.40.0.tar.gz
Windows Binary SimBindProfiles_1.40.0.zip
macOS Binary (x86_64) SimBindProfiles_1.40.0.tgz
macOS Binary (arm64) SimBindProfiles_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SimBindProfiles
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SimBindProfiles
Bioc Package Browser https://code.bioconductor.org/browse/SimBindProfiles/
Package Short Url https://bioconductor.org/packages/SimBindProfiles/
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