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TDbasedUFEadv

Advanced package of tensor decomposition based unsupervised feature extraction


Bioconductor version: Release (3.18)

This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("TDbasedUFEadv")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFEadv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDbasedUFEadv")
Enrichment HTML R Script
Explanation of TDbasedUFEadv HTML R Script
How to use TDbasedUFEadv HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version 1.2.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License GPL-3
Depends
Imports TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, RTCGA, stats, enrichplot, DOSE, STRINGdb, enrichR, hash, shiny
System Requirements
URL https://github.com/tagtag/TDbasedUFEadv
Bug Reports https://github.com/tagtag/TDbasedUFEadv/issues
See More
Suggests knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TDbasedUFEadv_1.2.0.tar.gz
Windows Binary TDbasedUFEadv_1.2.0.zip
macOS Binary (x86_64) TDbasedUFEadv_1.2.0.tgz
macOS Binary (arm64) TDbasedUFEadv_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TDbasedUFEadv
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TDbasedUFEadv
Bioc Package Browser https://code.bioconductor.org/browse/TDbasedUFEadv/
Package Short Url https://bioconductor.org/packages/TDbasedUFEadv/
Package Downloads Report Download Stats