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XDE

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression


Bioconductor version: Release (3.18)

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")
XDE Vignette PDF R Script
XdeParameterClass Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, Microarray, Software
Version 2.48.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5)
Imports BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
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Suggests MASS, RUnit
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Enhances coda
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XDE_2.48.0.tar.gz
Windows Binary XDE_2.48.0.zip
macOS Binary (x86_64) XDE_2.48.0.tgz
macOS Binary (arm64) XDE_2.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XDE
Bioc Package Browser https://code.bioconductor.org/browse/XDE/
Package Short Url https://bioconductor.org/packages/XDE/
Package Downloads Report Download Stats