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adverSCarial

adverSCarial, generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks


Bioconductor version: Release (3.19)

adverSCarial is an R Package designed for generating and analyzing the vulnerability of scRNA-seq classifiers to adversarial attacks. The package is versatile and provides a format for integrating any type of classifier. It offers functions for studying and generating two types of attacks, single gene attack and max change attack. The single gene attack involves making a small modification to the input to alter the classification. The max change attack involves making a large modification to the input without changing its classification. The package provides a comprehensive solution for evaluating the robustness of scRNA-seq classifiers against adversarial attacks.

Author: Ghislain FIEVET [aut, cre] , S├ębastien HERGALANT [aut]

Maintainer: Ghislain FIEVET <ghislain.fievet at gmail.com>

Citation (from within R, enter citation("adverSCarial")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("adverSCarial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adverSCarial")
Vign01_adverSCarial HTML R Script
Vign02_overView_analysis HTML R Script
Vign03_adaptClassifier HTML
Vign04_advRandWalkMinChange HTML
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Classification, SingleCell, Software, Transcriptomics
Version 1.2.0
In Bioconductor since BioC 3.18 (R-4.3) (0.5 years)
License MIT + file LICENSE
Depends
Imports gtools, S4Vectors, methods, DelayedArray
System Requirements
URL
See More
Suggests knitr, RUnit, BiocGenerics, TENxPBMCData, CHETAH, stringr, LoomExperiment
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package adverSCarial_1.2.0.tar.gz
Windows Binary adverSCarial_1.2.0.zip
macOS Binary (x86_64) adverSCarial_1.2.0.tgz
macOS Binary (arm64) adverSCarial_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/adverSCarial
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/adverSCarial
Bioc Package Browser https://code.bioconductor.org/browse/adverSCarial/
Package Short Url https://bioconductor.org/packages/adverSCarial/
Package Downloads Report Download Stats