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annaffy

Annotation tools for Affymetrix biological metadata


Bioconductor version: Release (3.18)

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <colin at colinsmith.org>

Maintainer: Colin A. Smith <colin at colinsmith.org>

Citation (from within R, enter citation("annaffy")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("annaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annaffy")
annaffy Primer PDF R Script
Reference Manual PDF

Details

biocViews Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software
Version 1.74.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 2.5.0), methods, Biobase, BiocManager, GO.db
Imports AnnotationDbi(>= 0.1.15), DBI
System Requirements
URL
See More
Suggests hgu95av2.db, multtest, tcltk
Linking To
Enhances
Depends On Me webbioc
Imports Me a4Base
Suggests Me metaMA
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package annaffy_1.74.0.tar.gz
Windows Binary annaffy_1.74.0.zip
macOS Binary (x86_64) annaffy_1.74.0.tgz
macOS Binary (arm64) annaffy_1.74.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/annaffy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/annaffy
Bioc Package Browser https://code.bioconductor.org/browse/annaffy/
Package Short Url https://bioconductor.org/packages/annaffy/
Package Downloads Report Download Stats