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biodbChebi

biodbChebi, a library for connecting to the ChEBI Database


Bioconductor version: Release (3.18)

The biodbChebi library provides access to the ChEBI Database, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name, mass or other fields.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbChebi")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbChebi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbChebi")
Introduction to the biodbChebi package. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License AGPL-3
Depends R (>= 4.1)
Imports R6, biodb(>= 1.1.5)
System Requirements
URL https://github.com/pkrog/biodbChebi
Bug Reports https://github.com/pkrog/biodbChebi/issues
See More
Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr
Linking To
Enhances
Depends On Me
Imports Me phenomis
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbChebi_1.8.0.tar.gz
Windows Binary biodbChebi_1.8.0.zip (64-bit only)
macOS Binary (x86_64) biodbChebi_1.8.0.tgz
macOS Binary (arm64) biodbChebi_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbChebi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbChebi
Bioc Package Browser https://code.bioconductor.org/browse/biodbChebi/
Package Short Url https://bioconductor.org/packages/biodbChebi/
Package Downloads Report Download Stats