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biodbNci

biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database


Bioconductor version: Release (3.18)

The biodbNci library is an extension of the biodb framework package. It provides access to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database. It allows to retrieve entries by their accession number, and run specific web services.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbNci")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbNci")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbNci")
Introduction to the biodbNci package. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License AGPL-3
Depends R (>= 4.1)
Imports biodb(>= 1.3.1), R6, Rcpp, chk
System Requirements
URL
See More
Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
Linking To Rcpp, testthat
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbNci_1.6.0.tar.gz
Windows Binary biodbNci_1.6.0.zip
macOS Binary (x86_64) biodbNci_1.6.0.tgz
macOS Binary (arm64) biodbNci_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbNci
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbNci
Bioc Package Browser https://code.bioconductor.org/browse/biodbNci/
Package Short Url https://bioconductor.org/packages/biodbNci/
Package Downloads Report Download Stats