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biodbUniprot, a library for connecting to the Uniprot Database

Bioconductor version: Release (3.18)

The biodbUniprot library is an extension of the biodb framework package. It provides access to the UniProt database. It allows to retrieve entries by their accession number, and run web service queries for searching for entries.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbUniprot")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Introduction to the biodbUniprot package. HTML R Script
Reference Manual PDF


biocViews DataImport, Infrastructure, Software
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License AGPL-3
Depends R (>= 4.1.0)
Imports R6, biodb(>= 1.4.2)
System Requirements
URL https://github.com/pkrog/biodbUniprot
Bug Reports https://github.com/pkrog/biodbUniprot/issues
See More
Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr, covr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbUniprot_1.8.0.tar.gz
Windows Binary biodbUniprot_1.8.0.zip (64-bit only)
macOS Binary (x86_64) biodbUniprot_1.8.0.tgz
macOS Binary (arm64) biodbUniprot_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbUniprot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbUniprot
Bioc Package Browser https://code.bioconductor.org/browse/biodbUniprot/
Package Short Url https://bioconductor.org/packages/biodbUniprot/
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