Welcome to the new bioconductor.org!

bnbc

Bandwise normalization and batch correction of Hi-C data


Bioconductor version: Release (3.18)

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at gmail.com>

Citation (from within R, enter citation("bnbc")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bnbc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bnbc")
bnbc User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews HiC, Normalization, Preprocessing, Software
Version 1.24.2
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, BiocGenerics, SummarizedExperiment, GenomicRanges
Imports Rcpp (>= 0.12.12), IRanges, rhdf5, data.table, GenomeInfoDb, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils, HiCBricks
System Requirements
URL https://github.com/hansenlab/bnbc
Bug Reports https://github.com/hansenlab/bnbc/issues
See More
Suggests BiocStyle, knitr, rmarkdown, RUnit, BSgenome.Hsapiens.UCSC.hg19
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bnbc_1.24.2.tar.gz
Windows Binary bnbc_1.24.2.zip (64-bit only)
macOS Binary (x86_64) bnbc_1.24.2.tgz
macOS Binary (arm64) bnbc_1.24.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/bnbc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bnbc
Bioc Package Browser https://code.bioconductor.org/browse/bnbc/
Package Short Url https://bioconductor.org/packages/bnbc/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive