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cellbaseR

Querying annotation data from the high performance Cellbase web


Bioconductor version: Release (3.18)

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Author: Mohammed OE Abdallah

Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>

Citation (from within R, enter citation("cellbaseR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellbaseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellbaseR")
Simplifying Genomic Annotations in R HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Software, VariantAnnotation
Version 1.26.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License Apache License (== 2.0)
Depends R (>= 3.4)
Imports methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
System Requirements
URL https://github.com/melsiddieg/cellbaseR
See More
Suggests BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellbaseR_1.26.0.tar.gz
Windows Binary cellbaseR_1.26.0.zip (64-bit only)
macOS Binary (x86_64) cellbaseR_1.26.0.tgz
macOS Binary (arm64) cellbaseR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellbaseR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellbaseR
Bioc Package Browser https://code.bioconductor.org/browse/cellbaseR/
Package Short Url https://bioconductor.org/packages/cellbaseR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive