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Enhanced copy-number variation analysis using Illumina DNA methylation arrays

Bioconductor version: Release (3.18)

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.

Author: Volker Hovestadt, Marc Zapatka

Maintainer: Volker Hovestadt <conumee at hovestadt.bio>

Citation (from within R, enter citation("conumee")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

conumee HTML R Script
Reference Manual PDF


biocViews CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>= 2)
Depends R (>= 3.5.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb
System Requirements
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Suggests BiocStyle, knitr, rmarkdown, minfiData, RCurl
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Imports Me
Suggests Me CopyNeutralIMA
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Follow Installation instructions to use this package in your R session.

Source Package conumee_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64) conumee_1.36.0.tgz
macOS Binary (arm64) conumee_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/conumee
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/conumee
Bioc Package Browser https://code.bioconductor.org/browse/conumee/
Package Short Url https://bioconductor.org/packages/conumee/
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