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farms

FARMS - Factor Analysis for Robust Microarray Summarization


Bioconductor version: Release (3.18)

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

Citation (from within R, enter citation("farms")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("farms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version 1.54.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License LGPL (>= 2.1)
Depends R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports affy, MASS, Biobase(>= 1.13.41), methods, graphics
System Requirements
URL http://www.bioinf.jku.at/software/farms/farms.html
See More
Suggests affydata, Biobase, utils
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me DEqMS
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary farms_1.54.0.zip
macOS Binary (x86_64) farms_1.54.0.tgz
macOS Binary (arm64) farms_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/farms
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/farms
Bioc Package Browser https://code.bioconductor.org/browse/farms/
Package Short Url https://bioconductor.org/packages/farms/
Package Downloads Report Download Stats