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flowGraph

Identifying differential cell populations in flow cytometry data accounting for marker frequency


Bioconductor version: Release (3.18)

Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.

Author: Alice Yue [aut, cre]

Maintainer: Alice Yue <aya43 at sfu.ca>

Citation (from within R, enter citation("flowGraph")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowGraph")
flowGraph HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software, StatisticalMethod, Visualization
Version 1.10.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License Artistic-2.0
Depends R (>= 4.1)
Imports effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2, igraph, Matrix, matrixStats, stats, utils, visNetwork, htmlwidgets, grDevices, methods, stringr, stringi, Rdpack, data.table (>= 1.9.5), gridExtra
System Requirements
URL https://github.com/aya49/flowGraph
Bug Reports https://github.com/aya49/flowGraph/issues
See More
Suggests BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowGraph_1.10.0.tar.gz
Windows Binary flowGraph_1.10.0.zip
macOS Binary (x86_64) flowGraph_1.10.0.tgz
macOS Binary (arm64) flowGraph_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowGraph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowGraph
Bioc Package Browser https://code.bioconductor.org/browse/flowGraph/
Package Short Url https://bioconductor.org/packages/flowGraph/
Package Downloads Report Download Stats