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gg4way

4way Plots of Differential Expression


Bioconductor version: Release (3.18)

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Author: Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

Maintainer: Benjamin I Laufer <blaufer at gmail.com>

Citation (from within R, enter citation("gg4way")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gg4way")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gg4way")
gg4way HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcription, Visualization
Version 1.0.2
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.3.0), ggplot2
Imports DESeq2, dplyr, edgeR, ggrepel, glue, janitor, limma, magrittr, methods, purrr, rlang, scales, stats, stringr, tibble, tidyr
System Requirements
URL https://github.com/ben-laufer/gg4way
Bug Reports https://github.com/ben-laufer/gg4way/issues
See More
Suggests airway, BiocStyle, knitr, org.Hs.eg.db, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gg4way_1.0.2.tar.gz
Windows Binary gg4way_1.0.2.zip
macOS Binary (x86_64) gg4way_1.0.2.tgz
macOS Binary (arm64) gg4way_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/gg4way
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gg4way
Bioc Package Browser https://code.bioconductor.org/browse/gg4way/
Package Short Url https://bioconductor.org/packages/gg4way/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive