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goProfiles

goProfiles: an R package for the statistical analysis of functional profiles


Bioconductor version: Release (3.18)

The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.

Author: Alex Sanchez, Jordi Ocana and Miquel Salicru

Maintainer: Alex Sanchez <asanchez at ub.edu>

Citation (from within R, enter citation("goProfiles")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("goProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goProfiles")
goProfiles Vignette PDF R Script
goProfiles-comparevisual.pdf PDF
goProfiles-plotProfileMF.pdf PDF
Reference Manual PDF

Details

biocViews Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version 1.64.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License GPL-2
Depends Biobase, AnnotationDbi, GO.db, CompQuadForm, stringr
Imports
System Requirements
URL
See More
Suggests org.Hs.eg.db
Linking To
Enhances
Depends On Me
Imports Me goSorensen
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package goProfiles_1.64.0.tar.gz
Windows Binary goProfiles_1.64.0.zip
macOS Binary (x86_64) goProfiles_1.64.0.tgz
macOS Binary (arm64) goProfiles_1.64.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/goProfiles
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/goProfiles
Bioc Package Browser https://code.bioconductor.org/browse/goProfiles/
Package Short Url https://bioconductor.org/packages/goProfiles/
Package Downloads Report Download Stats