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gpuMagic

An openCL compiler with the capacity to compile R functions and run the code on GPU


Bioconductor version: Release (3.18)

The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.

Author: Jiefei Wang [aut, cre], Martin Morgan [aut]

Maintainer: Jiefei Wang <szwjf08 at gmail.com>

Citation (from within R, enter citation("gpuMagic")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gpuMagic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gpuMagic")
Customized_opencl_code HTML R Script
quickStart HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6.0), methods, utils
Imports Deriv, DescTools, digest, pryr, stringr, BiocGenerics
System Requirements 1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make
URL
Bug Reports https://github.com/Jiefei-Wang/gpuMagic/issues
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Suggests testthat, knitr, rmarkdown, BiocStyle
Linking To Rcpp
Enhances
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gpuMagic_1.18.0.tar.gz
Windows Binary gpuMagic_1.18.0.zip
macOS Binary (x86_64) gpuMagic_1.18.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/gpuMagic
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gpuMagic
Bioc Package Browser https://code.bioconductor.org/browse/gpuMagic/
Package Short Url https://bioconductor.org/packages/gpuMagic/
Package Downloads Report Download Stats