gpuMagic
An openCL compiler with the capacity to compile R functions and run the code on GPU
Bioconductor version: Release (3.19)
The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.
Author: Jiefei Wang [aut, cre], Martin Morgan [aut]
Maintainer: Jiefei Wang <szwjf08 at gmail.com>
citation("gpuMagic")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gpuMagic")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gpuMagic")
Customized_opencl_code | HTML | R Script |
quickStart | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Infrastructure, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | GPL-3 |
Depends | R (>= 3.6.0), methods, utils |
Imports | Deriv, DescTools, digest, pryr, stringr, BiocGenerics |
System Requirements | 1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make |
URL | |
Bug Reports | https://github.com/Jiefei-Wang/gpuMagic/issues |
See More
Suggests | testthat, knitr, rmarkdown, BiocStyle |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | gpuMagic_1.20.0.tar.gz |
Windows Binary | gpuMagic_1.20.0.zip |
macOS Binary (x86_64) | gpuMagic_1.20.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/gpuMagic |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gpuMagic |
Bioc Package Browser | https://code.bioconductor.org/browse/gpuMagic/ |
Package Short Url | https://bioconductor.org/packages/gpuMagic/ |
Package Downloads Report | Download Stats |