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ldblock

data structures for linkage disequilibrium measures in populations


Bioconductor version: Release (3.18)

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")
ldblock package: linkage disequilibrium data structures HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 3.5), methods, rlang
Imports BiocGenerics(>= 0.25.1), httr, Matrix
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Suggests RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats, VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.32.0.tar.gz
Windows Binary ldblock_1.32.0.zip
macOS Binary (x86_64) ldblock_1.32.0.tgz
macOS Binary (arm64) ldblock_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock
Bioc Package Browser https://code.bioconductor.org/browse/ldblock/
Package Short Url https://bioconductor.org/packages/ldblock/
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