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limmaGUI

GUI for limma Package With Two Color Microarrays


Bioconductor version: Release (3.18)

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("limmaGUI")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("limmaGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("limmaGUI")
about.html HTML
CustMenu.html HTML
Extracting limma objects from limmaGUI files PDF
import.html HTML
index.html HTML
InputFiles.html HTML
lgDevel.html HTML
limmaGUI Vignette PDF R Script
LinModIntro.pdf PDF
windowsFocus.html HTML
Reference Manual PDF

Details

biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray
Version 1.78.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>=2)
Depends
Imports methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils
System Requirements
URL http://bioinf.wehi.edu.au/limmaGUI/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package limmaGUI_1.78.0.tar.gz
Windows Binary limmaGUI_1.78.0.zip
macOS Binary (x86_64) limmaGUI_1.78.0.tgz
macOS Binary (arm64) limmaGUI_1.78.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/limmaGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/limmaGUI
Bioc Package Browser https://code.bioconductor.org/browse/limmaGUI/
Package Short Url https://bioconductor.org/packages/limmaGUI/
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