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lmdme

Linear Model decomposition for Designed Multivariate Experiments


Bioconductor version: Release (3.18)

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Citation (from within R, enter citation("lmdme")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lmdme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lmdme")
lmdme: linear model framework for PCA/PLS analysis of ANOVA decomposition on Designed Multivariate Experiments in R PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Cancer, DifferentialExpression, ExperimentData, Microarray, OneChannel, Software, TwoChannel, Visualization
Version 1.44.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>=2)
Depends R (>= 2.14.1), pls, stemHypoxia
Imports stats, methods, limma
System Requirements
URL http://www.bdmg.com.ar/?page_id=38
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Enhances parallel
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lmdme_1.44.0.tar.gz
Windows Binary lmdme_1.44.0.zip (64-bit only)
macOS Binary (x86_64) lmdme_1.44.0.tgz
macOS Binary (arm64) lmdme_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/lmdme
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lmdme
Bioc Package Browser https://code.bioconductor.org/browse/lmdme/
Package Short Url https://bioconductor.org/packages/lmdme/
Package Downloads Report Download Stats