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msmsEDA

Exploratory Data Analysis of LC-MS/MS data by spectral counts


Bioconductor version: Release (3.18)

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at gmail.com>

Citation (from within R, enter citation("msmsEDA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msmsEDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msmsEDA")
msmsEDA: Batch effects detection in LC-MSMS experiments PDF R Script
Reference Manual PDF

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends R (>= 3.0.1), MSnbase
Imports MASS, gplots, RColorBrewer
System Requirements
URL
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Suggests
Linking To
Enhances
Depends On Me msmsTests
Imports Me
Suggests Me Harman, RforProteomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msmsEDA_1.40.0.tar.gz
Windows Binary msmsEDA_1.40.0.zip
macOS Binary (x86_64) msmsEDA_1.40.0.tgz
macOS Binary (arm64) msmsEDA_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/msmsEDA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msmsEDA
Bioc Package Browser https://code.bioconductor.org/browse/msmsEDA/
Package Short Url https://bioconductor.org/packages/msmsEDA/
Package Downloads Report Download Stats