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ncGTW

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection


Bioconductor version: Release (3.18)

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

Author: Chiung-Ting Wu <ctwu at vt.edu>

Maintainer: Chiung-Ting Wu <ctwu at vt.edu>

Citation (from within R, enter citation("ncGTW")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncGTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncGTW")
ncGTW User Manual HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, MassSpectrometry, Metabolomics, Software
Version 1.16.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-2
Depends methods, BiocParallel, xcms
Imports Rcpp, grDevices, graphics, stats
System Requirements
URL
Bug Reports https://github.com/ChiungTingWu/ncGTW/issues
See More
Suggests BiocStyle, knitr, testthat, rmarkdown
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncGTW_1.16.0.tar.gz
Windows Binary ncGTW_1.16.0.zip
macOS Binary (x86_64) ncGTW_1.16.0.tgz
macOS Binary (arm64) ncGTW_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncGTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncGTW
Bioc Package Browser https://code.bioconductor.org/browse/ncGTW/
Package Short Url https://bioconductor.org/packages/ncGTW/
Package Downloads Report Download Stats