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ncRNAtools

An R toolkit for non-coding RNA


Bioconductor version: Release (3.18)

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut] , Guy-Bart Stan [aut] , Rodrigo Ledesma-Amaro [aut]

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>

Citation (from within R, enter citation("ncRNAtools")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncRNAtools")
rfaRm HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends
Imports httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors
System Requirements
URL
Bug Reports https://github.com/LaraSellesVidal/ncRNAtools/issues
See More
Suggests knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncRNAtools_1.12.0.tar.gz
Windows Binary ncRNAtools_1.12.0.zip
macOS Binary (x86_64) ncRNAtools_1.12.0.tgz
macOS Binary (arm64) ncRNAtools_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncRNAtools
Bioc Package Browser https://code.bioconductor.org/browse/ncRNAtools/
Package Short Url https://bioconductor.org/packages/ncRNAtools/
Package Downloads Report Download Stats