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Outlier Protein and Phosphosite Target Identifier

Bioconductor version: Release (3.18)

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Outlier Protein and Phosphosite Target Identifier HTML R Script
Reference Manual PDF


biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.16.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License MIT
Depends R (>= 3.5)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
System Requirements
URL https://github.com/Huang-lab/oppti
Bug Reports https://github.com/Huang-lab/oppti/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oppti_1.16.0.tar.gz
Windows Binary oppti_1.16.0.zip
macOS Binary (x86_64) oppti_1.16.0.tgz
macOS Binary (arm64) oppti_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser https://code.bioconductor.org/browse/oppti/
Package Short Url https://bioconductor.org/packages/oppti/
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