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Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):


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if (!require("BiocManager", quietly = TRUE))


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To view documentation for the version of this package installed in your system, start R and enter:

optimalFlow: optimal-transport approach to Flow Cytometry analysis HTML R Script
Reference Manual PDF


biocViews FlowCytometry, Software, Technology
Version 1.14.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License Artistic-2.0
Depends dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
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Suggests knitr, BiocStyle, rmarkdown, magick
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Follow Installation instructions to use this package in your R session.

Source Package optimalFlow_1.14.0.tar.gz
Windows Binary optimalFlow_1.14.0.zip
macOS Binary (x86_64) optimalFlow_1.14.0.tgz
macOS Binary (arm64) optimalFlow_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/optimalFlow
Bioc Package Browser https://code.bioconductor.org/browse/optimalFlow/
Package Short Url https://bioconductor.org/packages/optimalFlow/
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