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panelcn.mops

CNV detection tool for targeted NGS panel data


Bioconductor version: Release (3.18)

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid [aut], Gundula Povysil [aut, cre]

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Citation (from within R, enter citation("panelcn.mops")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("panelcn.mops")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")
panelcn.mops: Manual for the R package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version 1.24.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License LGPL (>= 2.0)
Depends R (>= 3.5.0), cn.mops, methods, utils, stats, graphics
Imports GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices
System Requirements
URL
See More
Suggests knitr, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me CopyNumberPlots
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package panelcn.mops_1.24.0.tar.gz
Windows Binary panelcn.mops_1.24.0.zip
macOS Binary (x86_64) panelcn.mops_1.24.0.tgz
macOS Binary (arm64) panelcn.mops_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/panelcn.mops
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/panelcn.mops
Bioc Package Browser https://code.bioconductor.org/browse/panelcn.mops/
Package Short Url https://bioconductor.org/packages/panelcn.mops/
Package Downloads Report Download Stats