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qckitfastq

FASTQ Quality Control


Bioconductor version: Release (3.18)

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Citation (from within R, enter citation("qckitfastq")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qckitfastq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qckitfastq")
Quality control analysis and visualization using qckitfastq PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews QualityControl, Sequencing, Software
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends
Imports magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn
System Requirements GNU make
URL
See More
Suggests knitr, rmarkdown, kableExtra, testthat
Linking To Rcpp, RSeqAn
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qckitfastq_1.18.0.tar.gz
Windows Binary
macOS Binary (x86_64) qckitfastq_1.18.0.tgz
macOS Binary (arm64) qckitfastq_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qckitfastq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qckitfastq
Bioc Package Browser https://code.bioconductor.org/browse/qckitfastq/
Package Short Url https://bioconductor.org/packages/qckitfastq/
Package Downloads Report Download Stats